Improve usability#2
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cthoyt wants to merge 1 commit intoArshSekhon:mainfrom
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Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR does two things:
pubtator_loader.from_linesfor an arbitrary iterable of stringspubtator_loader.from_pathfor any path or path-like objectpubtator_loader.from_gzfor a path or path-like object pointing to a file that needs to be gunzipped.It also updates the example in the README to reflect new usage.
spacyin pubtator_document.py so users can use this code ifspacyisn't installed.If you're able to merge this, it would be great to make a new release too so I could clean up the dependencies in my code. Thanks for making a nice library for us!